Information for 6-CCGGTCCCCGGA (Motif 6)


Reverse Opposite:

p-value:1e-13
log p-value:-3.193e+01
Information Content per bp:1.882
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets130.8 +/- 64.5bp
Average Position of motif in Background117.7 +/- 44.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0056.1_MZF1_1-4/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CCGGTCCCCGGA
----TCCCCA--

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCGGTCCCCGGA--
--NGTCCCNNGGGA

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CCGGTCCCCGGA--
----TTCCNGGAAG

E-box(bHLH)/Promoter/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCGGTCCCCGGA
CCGGTCACGTGA

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CCGGTCCCCGGA----
------RCCGGAARYN

MA0154.2_EBF1/Jaspar

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CCGGTCCCCGGA--
---GTCCCCAGGGA

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCGGTCCCCGGA---
-NNCTTCCNGGAAGN

Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:CCGGTCCCCGGA----
------RCCGGAAGTD

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CCGGTCCCCGGA-
---GTCACATGAY

MA0137.3_STAT1/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CCGGTCCCCGGA--
---TTTCCTGGAAA