Information for 7-AGGCCGTTTG (Motif 7)


Reverse Opposite:

p-value:1e-13
log p-value:-3.174e+01
Information Content per bp:1.452
Number of Target Sequences with motif191.0
Percentage of Target Sequences with motif12.75%
Number of Background Sequences with motif3054.0
Percentage of Background Sequences with motif7.16%
Average Position of motif in Targets107.0 +/- 62.3bp
Average Position of motif in Background111.3 +/- 71.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGGCCGTTTG
-GGCVGTTR-

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGGCCGTTTG
TGGCAGTTGG

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AGGCCGTTTG
BRRCVGTTDN

PB0149.1_Myb_2/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---AGGCCGTTTG---
NNNTGGCAGTTGGTNN

PB0150.1_Mybl1_2/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGGCCGTTTG---
CACGGCAGTTGGTNN

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGGCCGTTTG
CTAGGCCT----

MA0100.2_Myb/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AGGCCGTTTG
TGGCAGTTGN

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGGCCGTTTG-
-VBSYGTCTGG

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGGCCGTTTG
CNAGGCCT----

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGCCGTTTG
TGTCGGTT--