Information for 7-ASCTATTAAC (Motif 10)


Reverse Opposite:

p-value:1e-8
log p-value:-1.899e+01
Information Content per bp:1.825
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif4.92%
Number of Background Sequences with motif51.6
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets129.7 +/- 81.2bp
Average Position of motif in Background162.7 +/- 105.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---ASCTATTAAC-
AAAAACCATTAAGG

MA0046.1_HNF1A/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---ASCTATTAAC-
GNTAATNATTAACC

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:ASCTATTAAC
GGCCATTAAC

PH0006.1_Barhl2/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ASCTATTAAC--
AAAAACCAATTAAGAA

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:ASCTATTAAC
--YCATTAMC

PB0109.1_Bbx_2/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ASCTATTAAC-----
NNNNCTGTTAACNNTNN

MA0125.1_Nobox/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ASCTATTAAC
ACCAATTA--

PH0107.1_Msx2/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----ASCTATTAAC---
GAAGACCAATTAGCGCT

PH0005.1_Barhl1/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ASCTATTAAC--
AACAACCAATTAATTC

PH0108.1_Msx3/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ASCTATTAAC--
CAAAACCAATTAATTT