Information for 4-CCTACTATGTGT (Motif 13)


Reverse Opposite:

p-value:1e-7
log p-value:-1.716e+01
Information Content per bp:1.829
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.28%
Number of Background Sequences with motif12.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets189.0 +/- 89.1bp
Average Position of motif in Background106.6 +/- 67.5bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0033.1_FOXL1/Jaspar

Match Rank:1
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:CCTACTATGTGT-
-----TATGTNTA

MA0009.1_T/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CCTACTATGTGT---
----CTAGGTGTGAA

MA0124.1_NKX3-1/Jaspar

Match Rank:3
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CCTACTATGTGT
-----TAAGTAT

MA0497.1_MEF2C/Jaspar

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCTACTATGTGT-----
--TTCTATTTTTAGNNN

MA0052.2_MEF2A/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CCTACTATGTGT----
-NNGCTATTTTTAGCN

PH0083.1_Irx3_1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCTACTATGTGT-----
ANTATTACATGTANNNN

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CCTACTATGTGT---
---KCTATTTTTRGH

PB0166.1_Sox12_2/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CCTACTATGTGT----
ANTCCTTTGTCTNNNN

PH0084.1_Irx3_2/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CCTACTATGTGT-----
NNTATTACATGTANNNT

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:CCTACTATGTGT--
----CTATTTTTGG