Information for 9-ACTGTCCGGG (Motif 16)


Reverse Opposite:

p-value:1e-6
log p-value:-1.550e+01
Information Content per bp:1.847
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif5.74%
Number of Background Sequences with motif154.9
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets147.4 +/- 79.2bp
Average Position of motif in Background170.9 +/- 111.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:ACTGTCCGGG
-CTGTCTGG-

MA0028.1_ELK1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:ACTGTCCGGG--
--CTTCCGGNNN

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ACTGTCCGGG----
NNTNNTGTCTGGNNTNG

MA0155.1_INSM1/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:ACTGTCCGGG----
--TGTCAGGGGGCG

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:ACTGTCCGGG-
-CTGTTCCTGG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ACTGTCCGGG
VBSYGTCTGG-

MA0100.2_Myb/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ACTGTCCGGG
CCAACTGCCA---

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:ACTGTCCGGG-----
-ATGCCCGGGCATGT

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ACTGTCCGGG
NRYTTCCGGY

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ACTGTCCGGG
GCTGTG----