Information for 7-AKGARCAYCCRT (Motif 17)


Reverse Opposite:

p-value:1e-6
log p-value:-1.488e+01
Information Content per bp:1.863
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif2.46%
Number of Background Sequences with motif6.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets132.3 +/- 15.4bp
Average Position of motif in Background154.1 +/- 91.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AKGARCAYCCRT-
-GGACCACCCACG

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AKGARCAYCCRT--
CATAAGACCACCATTAC

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AKGARCAYCCRT
CCAGGAACAG----

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AKGARCAYCCRT
GGGAGGACNG--

PB0099.1_Zfp691_1/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AKGARCAYCCRT--
NNNNTGAGCACTGTNNG

MA0101.1_REL/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AKGARCAYCCRT
-GGAAANCCCC-

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:7
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----AKGARCAYCCRT
ADGGYAGYAGCATCT--

MA0091.1_TAL1::TCF3/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AKGARCAYCCRT-
-CGACCATCTGTT

PB0025.1_Glis2_1/Jaspar

Match Rank:9
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--AKGARCAYCCRT--
TATCGACCCCCCACAG

MA0136.1_ELF5/Jaspar

Match Rank:10
Score:0.49
Offset:3
Orientation:forward strand
Alignment:AKGARCAYCCRT
---TACTTCCTT