Information for 10-TRTGTGTGCA (Motif 18)


Reverse Opposite:

p-value:1e-5
log p-value:-1.307e+01
Information Content per bp:1.736
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif10.66%
Number of Background Sequences with motif999.1
Percentage of Background Sequences with motif2.11%
Average Position of motif in Targets194.5 +/- 60.4bp
Average Position of motif in Background167.4 +/- 94.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.85
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0104.1_Zscan4_1/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-TRTGTGTGCA------
NTNTATGTGCACATNNN

PB0026.1_Gm397_1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TRTGTGTGCA------
NNGTATGTGCACATNNN

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TRTGTGTGCA---
NNNNTTGTGTGCTTNN

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TRTGTGTGCA-------
NSTGTTTRCWCAGBNNN

PB0130.1_Gm397_2/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TRTGTGTGCA---
NNGCGTGTGTGCNGCN

PB0044.1_Mtf1_1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TRTGTGTGCA----
GGGCCGTGTGCAAAAA

MA0157.1_FOXO3/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TRTGTGTGCA
--TGTTTACA

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TRTGTGTGCA---
CCATTGTATGCAAAT

MA0009.1_T/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TRTGTGTGCA
CTAGGTGTGAA

MA0033.1_FOXL1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TRTGTGTGCA
TATGTNTA--