Information for 4-GCAGGGGT (Motif 19)


Reverse Opposite:

p-value:1e-5
log p-value:-1.240e+01
Information Content per bp:1.905
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif19.67%
Number of Background Sequences with motif3336.3
Percentage of Background Sequences with motif7.04%
Average Position of motif in Targets158.2 +/- 84.3bp
Average Position of motif in Background163.3 +/- 102.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGGGT-
NNCAGGTGNN

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GCAGGGGT-------
GGCGAGGGGTCAAGGGC

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GCAGGGGT
CACAGCAGGGGG

MA0103.2_ZEB1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCAGGGGT--
-CAGGTGAGG

MA0057.1_MZF1_5-13/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCAGGGGT--
GGAGGGGGAA

PB0030.1_Hnf4a_1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCAGGGGT-------
CTCCAGGGGTCAATTGA

MA0522.1_Tcf3/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GCAGGGGT-
NTGCAGCTGTG

MA0155.1_INSM1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCAGGGGT--
TGTCAGGGGGCG

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGGGT
CACAGN---

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCAGGGGT--
GCAGTGATTT