Information for 2-CCTATATCCATG (Motif 2)


Reverse Opposite:

p-value:1e-10
log p-value:-2.431e+01
Information Content per bp:1.919
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.28%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets176.5 +/- 85.0bp
Average Position of motif in Background145.2 +/- 52.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCTATATCCATG
AAGATATCCTT-

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCTATATCCATG
-GHATATKCAT-

MA0136.1_ELF5/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CCTATATCCATG
--TACTTCCTT-

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCTATATCCATG-----
---ACATTCATGACACG

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCTATATCCATG
--ATTTTCCATT

PB0163.1_Six6_2/Jaspar

Match Rank:6
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCTATATCCATG-
ATGGGATATATCCGCCT

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CCTATATCCATG----
GACCACATTCATACAAT

PH0082.1_Irx2/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CCTATATCCATG-------
--TAAATACATGTAAAATT

PH0148.1_Pou3f3/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CCTATATCCATG----
TNNATTATGCATANNTT

MA0152.1_NFATC2/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CCTATATCCATG
---TTTTCCA--