Information for 13-CTGTCTTGCT (Motif 20)


Reverse Opposite:

p-value:1e-3
log p-value:-8.012e+00
Information Content per bp:1.926
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif10.66%
Number of Background Sequences with motif1639.7
Percentage of Background Sequences with motif3.46%
Average Position of motif in Targets175.9 +/- 84.9bp
Average Position of motif in Background159.7 +/- 115.7bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CTGTCTTGCT---
NNTNNTGTCTGGNNTNG

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTGTCTTGCT
CTGTCTGG--

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTGTCTTGCT---
CTGTCTGTCACCT

MA0498.1_Meis1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTGTCTTGCT---
AGCTGTCACTCACCT

PH0169.1_Tgif1/Jaspar

Match Rank:5
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------CTGTCTTGCT-
NNNCAGCTGTCAATATN

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTGTCTTGCT---
-TGTCTGDCACCT

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTGTCTTGCT
VBSYGTCTGG--

MA0598.1_EHF/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CTGTCTTGCT-
---CCTTCCTG

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CTGTCTTGCT
GCTGTG-----

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTGTCTTGCT------
-TNTCCTGCTGTGNNG