Information for 14-GAAGAGAAGA (Motif 21)


Reverse Opposite:

p-value:1e-2
log p-value:-6.907e+00
Information Content per bp:1.961
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif4.10%
Number of Background Sequences with motif291.1
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets237.2 +/- 93.7bp
Average Position of motif in Background179.0 +/- 117.9bp
Strand Bias (log2 ratio + to - strand density)-2.5
Multiplicity (# of sites on avg that occur together)2.60
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0037.2_GATA3/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GAAGAGAAGA
--AGATAAGA

MA0029.1_Mecom/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GAAGAGAAGA-----
-AAGATAAGATAACA

MA0482.1_Gata4/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GAAGAGAAGA
NNGAGATAAGA

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GAAGAGAAGA
CGGAAGTGAAAC

MA0035.3_Gata1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GAAGAGAAGA-
ANAGATAAGAA

PB0021.1_Gata3_1/Jaspar

Match Rank:6
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GAAGAGAAGA-------
TTTTTAGAGATAAGAAATAAAG

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAAGAGAAGA-
-NAGATAAGNN

MA0036.2_GATA2/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GAAGAGAAGA----
NCAGATAAGAANNN

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GAAGAGAAGA
----NGAAGC

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAAGAGAAGA-
-CAGATAAGGN