Information for 1-ATGTTCCCCG (Motif 3)


Reverse Opposite:

p-value:1e-9
log p-value:-2.199e+01
Information Content per bp:1.871
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif8.20%
Number of Background Sequences with motif212.5
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets218.6 +/- 79.8bp
Average Position of motif in Background171.0 +/- 112.8bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0056.1_MZF1_1-4/Jaspar

Match Rank:1
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:ATGTTCCCCG
----TCCCCA

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:ATGTTCCCCG
CTGTTCCTGG

MA0152.1_NFATC2/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:ATGTTCCCCG
-TTTTCCA--

MA0144.2_STAT3/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:ATGTTCCCCG---
--TTTCCCAGAAN

MA0081.1_SPIB/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:ATGTTCCCCG
---TTCCTCT

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:ATGTTCCCCG---
---TTCCNGGAAG

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:ATGTTCCCCG-
-HTTTCCCASG

MA0519.1_Stat5a::Stat5b/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:ATGTTCCCCG--
-ATTTCCAAGAA

MA0137.3_STAT1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:ATGTTCCCCG---
--TTTCCTGGAAA

MA0007.2_AR/Jaspar

Match Rank:10
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------ATGTTCCCCG
GNACANNNTGTTCTT--