Information for 2-CCCTTCAAAT (Motif 4)


Reverse Opposite:

p-value:1e-9
log p-value:-2.080e+01
Information Content per bp:1.660
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif29.51%
Number of Background Sequences with motif4630.7
Percentage of Background Sequences with motif9.78%
Average Position of motif in Targets178.0 +/- 76.5bp
Average Position of motif in Background165.4 +/- 108.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0114.1_Nkx2-5/Jaspar

Match Rank:1
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCCTTCAAAT-
TAAGCCACTTGAATTT

PH0113.1_Nkx2-4/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCCTTCAAAT-
TAAGCCACTTGAAATT

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCCTTCAAAT
CCTTTGATGT

PH0111.1_Nkx2-2/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CCCTTCAAAT--
ATAACCACTTGAAAATT

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCCTTCAAAT
CCTTTGAWGT

PH0171.1_Nkx2-1/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CCCTTCAAAT-
TAAGCCACTTGAAATT

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCCTTCAAAT
CGGTTTCAAA-

POL008.1_DCE_S_I/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCCTTCAAAT
-GCTTCC---

PB0170.1_Sox17_2/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CCCTTCAAAT---
GACCACATTCATACAAT

PH0115.1_Nkx2-6/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CCCTTCAAAT-
TAAGCCACTTAACATT