Information for 4-TCGGAGACAC (Motif 6)


Reverse Opposite:

p-value:1e-8
log p-value:-2.068e+01
Information Content per bp:1.866
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif9.02%
Number of Background Sequences with motif323.4
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets195.5 +/- 99.0bp
Average Position of motif in Background175.1 +/- 108.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0056.1_MZF1_1-4/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TCGGAGACAC
-TGGGGA---

PB0117.1_Eomes_2/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCGGAGACAC------
NNGGCGACACCTCNNN

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TCGGAGACAC
-CGGAGC---

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:4
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----TCGGAGACAC---
CTACTTGGATACGGAAT

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TCGGAGACAC
--CCAGACAG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TCGGAGACAC--
--CCAGACRSVB

PB0203.1_Zfp691_2/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TCGGAGACAC-------
TACGAGACTCCTCTAAC

PB0113.1_E2F3_2/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TCGGAGACAC----
AGCTCGGCGCCAAAAGC

PB0138.1_Irf4_2/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---TCGGAGACAC--
GNNACCGAGAATNNN

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:TCGGAGACAC--
----TGACACCT