Information for 3-TGTTGACCCCAA (Motif 7)


Reverse Opposite:

p-value:1e-8
log p-value:-2.065e+01
Information Content per bp:1.920
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.28%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets188.8 +/- 79.6bp
Average Position of motif in Background200.3 +/- 117.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0030.1_Hnf4a_1/Jaspar

Match Rank:1
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--TGTTGACCCCAA---
NNANTTGACCCCTNNNN

PB0057.1_Rxra_1/Jaspar

Match Rank:2
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--TGTTGACCCCAA---
TGTCGTGACCCCTTAAT

PB0118.1_Esrra_2/Jaspar

Match Rank:3
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--TGTTGACCCCAA---
NNNNTTGACCCCTNNNN

PB0157.1_Rara_2/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TGTTGACCCCAA---
NNCNTGACCCCGCTCT

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:TGTTGACCCCAA
---TGACCT---

PB0153.1_Nr2f2_2/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TGTTGACCCCAA---
NNNNTGACCCGGCGCG

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGTTGACCCCAA
CTGTTTAC-----

MA0071.1_RORA_1/Jaspar

Match Rank:8
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TGTTGACCCCAA-
---TGACCTTGAT

MA0031.1_FOXD1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGTTGACCCCAA
ATGTTTAC-----

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TGTTGACCCCAA
NYYTGTTTACHN---