Information for 5-TCGGTAATTA (Motif 8)


Reverse Opposite:

p-value:1e-8
log p-value:-2.061e+01
Information Content per bp:1.708
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif11.48%
Number of Background Sequences with motif626.4
Percentage of Background Sequences with motif1.32%
Average Position of motif in Targets228.5 +/- 74.5bp
Average Position of motif in Background164.1 +/- 114.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0023.1_Dlx4/Jaspar

Match Rank:1
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-TCGGTAATTA------
GTCGGTAATTATNGNGN

PH0022.1_Dlx3/Jaspar

Match Rank:2
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-TCGGTAATTA------
NNNGGTAATTATNGNGN

PH0053.1_Hoxa6/Jaspar

Match Rank:3
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--TCGGTAATTA----
NTNAGGTAATTACCTT

PH0061.1_Hoxb6/Jaspar

Match Rank:4
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--TCGGTAATTA----
TATTGGTAATTACCTT

PH0072.1_Hoxc8/Jaspar

Match Rank:5
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--TCGGTAATTA----
TTGGGGTAATTAACGT

PH0024.1_Dlx5/Jaspar

Match Rank:6
Score:0.79
Offset:0
Orientation:forward strand
Alignment:TCGGTAATTA------
GGGGTAATTAGCTCTG

PH0071.1_Hoxc6/Jaspar

Match Rank:7
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--TCGGTAATTA-----
NNTNATTAATTAATTTG

PH0052.1_Hoxa5/Jaspar

Match Rank:8
Score:0.78
Offset:0
Orientation:forward strand
Alignment:TCGGTAATTA------
ACGGTAATTAGCTCAG

PB0031.1_Hoxa3_1/Jaspar

Match Rank:9
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--TCGGTAATTA--
TGGAGGTAATTAAC

PH0049.1_Hoxa2/Jaspar

Match Rank:10
Score:0.77
Offset:0
Orientation:forward strand
Alignment:TCGGTAATTA------
AAGGTAATTAGCTCAT