Information for 6-AGTGAGGGTC (Motif 9)


Reverse Opposite:

p-value:1e-8
log p-value:-1.945e+01
Information Content per bp:1.856
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif9.84%
Number of Background Sequences with motif462.6
Percentage of Background Sequences with motif0.98%
Average Position of motif in Targets133.2 +/- 71.9bp
Average Position of motif in Background168.5 +/- 95.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0201.1_Zfp281_2/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AGTGAGGGTC----
NNNATTGGGGGTNTCCT

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AGTGAGGGTC
GAAAGTGAAAGT-

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.59
Offset:5
Orientation:forward strand
Alignment:AGTGAGGGTC-
-----AGGTCA

PB0025.1_Glis2_1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGTGAGGGTC----
NTNTGGGGGGTCNNNA

MA0508.1_PRDM1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AGTGAGGGTC-
AGAAAGTGAAAGTGA

PB0014.1_Esrra_1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGTGAGGGTC------
TATTCAAGGTCATGCGA

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGTGAGGGTC-----
TCTCAAAGGTCACGAG

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AGTGAGGGTC--
--TCAAGGTCAN

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGTGAGGGTC-----
NNANTGGTGGTCTTNNN

PB0024.1_Gcm1_1/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AGTGAGGGTC---
NNNNATGCGGGTNNNN