Information for 16-VYGTATSG (Motif 11)


Reverse Opposite:

p-value:1e-20
log p-value:-4.675e+01
Information Content per bp:1.547
Number of Target Sequences with motif152.0
Percentage of Target Sequences with motif8.03%
Number of Background Sequences with motif968.3
Percentage of Background Sequences with motif3.45%
Average Position of motif in Targets124.1 +/- 72.5bp
Average Position of motif in Background119.7 +/- 109.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0032.1_FOXC1/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---VYGTATSG
GGTAAGTA---

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----VYGTATSG-----
NNTNNTGTCTGGNNTNG

PB0106.1_Arid5a_2/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----VYGTATSG----
TNNTTTCGTATTNNANN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:VYGTATSG
CTGTCTGG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--VYGTATSG
VBSYGTCTGG

PB0121.1_Foxj3_2/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----VYGTATSG-----
NNCTTTGTTTTGNTNNN

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:VYGTATSG-----
-TGATTGGCTANN

PB0036.1_Irf6_1/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----VYGTATSG-----
NNNTTGGTTTCGNTNNN

PB0035.1_Irf5_1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-VYGTATSG------
NTGGTTTCGGTTNNN

PB0170.1_Sox17_2/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----VYGTATSG----
NTTNTATGAATGTGNNC