Information for 15-RTAGTVTAKA (Motif 14)


Reverse Opposite:

p-value:1e-16
log p-value:-3.884e+01
Information Content per bp:1.660
Number of Target Sequences with motif142.0
Percentage of Target Sequences with motif7.50%
Number of Background Sequences with motif959.1
Percentage of Background Sequences with motif3.41%
Average Position of motif in Targets113.6 +/- 64.7bp
Average Position of motif in Background136.8 +/- 123.6bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:RTAGTVTAKA
-TWGTCTGV-

MA0040.1_Foxq1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-RTAGTVTAKA
TATTGTTTATT

PH0163.1_Six3/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-RTAGTVTAKA------
GATAGGGTATCACTAAT

PB0098.1_Zfp410_1/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----RTAGTVTAKA---
TATTATGGGATGGATAA

PH0165.1_Six6_1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-RTAGTVTAKA------
AATAGGGTATCAATTAT

PB0181.1_Spdef_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---RTAGTVTAKA---
CTACTAGGATGTNNTN

PB0163.1_Six6_2/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-RTAGTVTAKA------
ANNNGGATATATCCNNN

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:RTAGTVTAKA--
-AAGGATATNTN

PH0162.1_Six2/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-RTAGTVTAKA------
AATGGGGTATCACGTTT

PH0161.1_Six1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RTAGTVTAKA------
GATGGGGTATCATTTTT