Information for 17-KTGTARSVTA (Motif 17)


Reverse Opposite:

p-value:1e-10
log p-value:-2.464e+01
Information Content per bp:1.512
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif1.64%
Number of Background Sequences with motif104.8
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets130.3 +/- 52.6bp
Average Position of motif in Background113.0 +/- 106.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0025.1_NFIL3/Jaspar

Match Rank:1
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--KTGTARSVTA
TTATGTAACAT-

MA0442.1_SOX10/Jaspar

Match Rank:2
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--KTGTARSVTA
CTTTGT------

MA0032.1_FOXC1/Jaspar

Match Rank:3
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---KTGTARSVTA
GGTAAGTA-----

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:KTGTARSVTA
TTGCAACATN

MA0043.1_HLF/Jaspar

Match Rank:5
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----KTGTARSVTA
NATTACGTAACC--

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---KTGTARSVTA
CCATTGTTNY---

PB0154.1_Osr1_2/Jaspar

Match Rank:7
Score:0.50
Offset:-5
Orientation:reverse strand
Alignment:-----KTGTARSVTA-
NNNTTAGGTAGCNTNT

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-KTGTARSVTA
ATTGTT-----

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:9
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---KTGTARSVTA--
CCATTGTATGCAAAT

PB0175.1_Sox4_2/Jaspar

Match Rank:10
Score:0.49
Offset:-7
Orientation:forward strand
Alignment:-------KTGTARSVTA
GGAAAAATTGTTAGGAA