Information for 21-GTGTTACAGNKT (Motif 18)


Reverse Opposite:

p-value:1e-9
log p-value:-2.184e+01
Information Content per bp:1.677
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif3.27%
Number of Background Sequences with motif374.6
Percentage of Background Sequences with motif1.33%
Average Position of motif in Targets139.2 +/- 60.5bp
Average Position of motif in Background128.1 +/- 103.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GTGTTACAGNKT
AGGTGTGAAM----

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GTGTTACAGNKT
NATGTTGCAA---

PH0163.1_Six3/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GTGTTACAGNKT-
ANANGTGATACCCTATN

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTGTTACAGNKT
MTGATGCAAT--

PH0161.1_Six1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GTGTTACAGNKT-
ANNNATGATACCCCATC

PH0162.1_Six2/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GTGTTACAGNKT-
ANANGTGATACCCCATT

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTGTTACAGNKT
ATGATGCAAT--

MA0099.2_JUN::FOS/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GTGTTACAGNKT
-TGAGTCA----

PH0157.1_Rhox11_1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GTGTTACAGNKT---
TCNNTTTACAGCGNNNT

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GTGTTACAGNKT
AGGTGTCA------