Information for 23-NCTCGGTGATCW (Motif 19)


Reverse Opposite:

p-value:1e-8
log p-value:-1.872e+01
Information Content per bp:1.453
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.32%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets124.2 +/- 62.6bp
Average Position of motif in Background105.5 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:NCTCGGTGATCW
CGTGGGTGGTCC

PH0016.1_Cux1_1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:NCTCGGTGATCW-----
ACCGGTTGATCACCTGA

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:3
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------NCTCGGTGATCW--
NNNTGAACTCNNTGACCTCN

PB0139.1_Irf5_2/Jaspar

Match Rank:4
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----NCTCGGTGATCW
NNAATTCTCGNTNAN--

MA0160.1_NR4A2/Jaspar

Match Rank:5
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:NCTCGGTGATCW-
-----GTGACCTT

MA0038.1_Gfi1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:NCTCGGTGATCW-
---CNGTGATTTN

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-NCTCGGTGATCW----
NNANTGGTGGTCTTNNN

MA0258.2_ESR2/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---NCTCGGTGATCW
AGGNCANNGTGACCT

MA0009.1_T/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:NCTCGGTGATCW
-CTAGGTGTGAA

PB0099.1_Zfp691_1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-NCTCGGTGATCW----
CGAACAGTGCTCACTAT