Information for 23-GACAGGGCCC (Motif 23)


Reverse Opposite:

p-value:1e-1
log p-value:-2.730e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif0.05%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets116.5 +/- 66.5bp
Average Position of motif in Background131.2 +/- 34.2bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)7.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GACAGGGCCC
CACAGN----

PH0141.1_Pknox2/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GACAGGGCCC-
NNATTGACAGGTGCTT

PH0140.1_Pknox1/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GACAGGGCCC-
GGATTGACAGGTCNTT

PB0200.1_Zfp187_2/Jaspar

Match Rank:4
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GACAGGGCCC-
NNAGGGACAAGGGCNC

PH0104.1_Meis2/Jaspar

Match Rank:5
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GACAGGGCCC-
NTATTGACAGGTNNTN

MA0498.1_Meis1/Jaspar

Match Rank:6
Score:0.57
Offset:-8
Orientation:reverse strand
Alignment:--------GACAGGGCCC
NNNTGAGTGACAGCT---

PH0105.1_Meis3/Jaspar

Match Rank:7
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GACAGGGCCC-
GTATTGACAGGTNNTT

PB0099.1_Zfp691_1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GACAGGGCCC-----
CGAACAGTGCTCACTAT

PH0102.1_Meis1/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GACAGGGCCC-
NTATTGACAGCTNNTT

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GACAGGGCCC
--CTAGGCCT