Information for 8-RCACGCAC (Motif 4)


Reverse Opposite:

p-value:1e-50
log p-value:-1.172e+02
Information Content per bp:1.638
Number of Target Sequences with motif289.0
Percentage of Target Sequences with motif15.26%
Number of Background Sequences with motif1595.0
Percentage of Background Sequences with motif5.68%
Average Position of motif in Targets128.8 +/- 71.0bp
Average Position of motif in Background133.4 +/- 137.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:1
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:RCACGCAC
-CACGCA-

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:2
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--RCACGCAC
TBGCACGCAA

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----RCACGCAC----
AGCGGCACACACGCAA

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:RCACGCAC
GCACGTNC

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:RCACGCAC
GCACGTAY

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:RCACGCAC--
GCACGTACCC

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:RCACGCAC---
-CRCCCACGCA

MA0472.1_EGR2/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---RCACGCAC----
CCCCCGCCCACGCAC

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-RCACGCAC---
YCCGCCCACGCN

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-RCACGCAC
BGCACGTA-