Information for 11-TGTGTGGTGTGT (Motif 5)


Reverse Opposite:

p-value:1e-50
log p-value:-1.166e+02
Information Content per bp:1.654
Number of Target Sequences with motif172.0
Percentage of Target Sequences with motif9.08%
Number of Background Sequences with motif641.8
Percentage of Background Sequences with motif2.28%
Average Position of motif in Targets127.9 +/- 66.9bp
Average Position of motif in Background122.0 +/- 196.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)2.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0511.1_RUNX2/Jaspar

Match Rank:1
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TGTGTGGTGTGT
GGGGTTTGTGGTTTG-

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGTGGTGTGT
NNNNTTGTGTGCTTNN-

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGTGTGGTGTGT
NNHTGTGGTTWN-

PB0130.1_Gm397_2/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGTGGTGTGT
NNGCGTGTGTGCNGCN-

MA0479.1_FOXH1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGTGTGGTGTGT
TGTGGATTNNN-

MA0002.2_RUNX1/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TGTGTGGTGTGT
GTCTGTGGTTT--

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TGTGTGGTGTGT
-CTGTGGTTTN-

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--TGTGTGGTGTGT---
NSTGTTTRCWCAGBNNN

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TGTGTGGTGTGT
NNTGTGGTTT--

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:TGTGTGGTGTGT
GCTGTGGTTT--