Information for 1-AATCGAATCG (Motif 1)


Reverse Opposite:

p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets511.0 +/- 0.0bp
Average Position of motif in Background325.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0468.1_DUX4/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AATCGAATCG
TAATTTAATCA

PB0037.1_Isgf3g_1/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AATCGAATCG--
CAAAATCGAAACTAA

PB0035.1_Irf5_1/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AATCGAATCG--
ATAAACCGAAACCAA

PB0033.1_Irf3_1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AATCGAATCG-
GAGAACCGAAACTG

PB0034.1_Irf4_1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AATCGAATCG---
CGTATCGAAACCAAA

PB0036.1_Irf6_1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AATCGAATCG-----
CTGATCGAAACCAAAGT

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AATCGAATCG-
TAATYNRATTAR

PB0068.1_Sox1_1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AATCGAATCG---
NNNTATTGAATTGNNN

PH0014.1_Cphx/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AATCGAATCG--
ATGATCGAATCAAA

PB0125.1_Gata3_2/Jaspar

Match Rank:10
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------AATCGAATCG-----
TTTTGTAGATTTTATCGACTTA