Information for 21-GAAGTATCATCG (Motif 10)


Reverse Opposite:

p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets613.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GAAGTATCATCG
ADGGYAGYAGCATCT

MA0124.1_NKX3-1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAAGTATCATCG
TAAGTAT-----

PH0161.1_Six1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GAAGTATCATCG--
GATGGGGTATCATTTTT

PH0166.1_Six6_2/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GAAGTATCATCG--
AATAGGGTATCAATATT

PB0059.1_Six6_1/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GAAGTATCATCG--
AATAGGGTATCATATAT

POL008.1_DCE_S_I/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GAAGTATCATCG
NGAAGC-------

MA0032.1_FOXC1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GAAGTATCATCG
GGTAAGTA------

PB0105.1_Arid3a_2/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAAGTATCATCG--
ACCCGTATCAAATTT

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:9
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GAAGTATCATCG
-----GTCATN-

PB0058.1_Sfpi1_1/Jaspar

Match Rank:10
Score:0.53
Offset:-7
Orientation:forward strand
Alignment:-------GAAGTATCATCG
TTAAGAGGAAGTTA-----