Information for 14-CCGAATAGAA (Motif 13)


Reverse Opposite:

p-value:1e-3
log p-value:-9.045e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif11.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.0 +/- 0.0bp
Average Position of motif in Background244.9 +/- 139.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0057.1_Hoxb13/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCGAATAGAA----
AACCCAATAAAATTCG

PB0186.1_Tcf3_2/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCGAATAGAA---
AGCCGAAAAAAAAAT

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCGAATAGAA----
CTACCAATAAAATTCT

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCGAATAGAA--
CGGAAGTGAAAC

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCGAATAGAA
NCYAATAAAA

PB0194.1_Zbtb12_2/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCGAATAGAA----
TATCATTAGAACGCT

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCGAATAGAA
CCAAAAATAG--

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CCGAATAGAA---
---AATGGAAAAT

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCGAATAGAA-----
AATGCAATAAAATTTAT

PB0024.1_Gcm1_1/Jaspar

Match Rank:10
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------CCGAATAGAA
TCGTACCCGCATCATT