Information for 18-ATGAACTCGA (Motif 14)


Reverse Opposite:

p-value:1e-3
log p-value:-8.552e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif18.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets196.0 +/- 0.0bp
Average Position of motif in Background302.2 +/- 291.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0071.1_RORA_1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ATGAACTCGA-
-TGACCTTGAT

PB0014.1_Esrra_1/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ATGAACTCGA---
NNNNATGACCTTGANTN

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ATGAACTCGA
NTGACCTTGA

MA0141.2_Esrrb/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ATGAACTCGA---
-TGACCTTGANNN

MA0074.1_RXRA::VDR/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:ATGAACTCGA------
-TGAACCCGATGACCC

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:ATGAACTCGA-
-TGACCTTGAV

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:ATGAACTCGA
-TGACCT---

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:ATGAACTCGA-
-TGACCTTGAN

PB0057.1_Rxra_1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----ATGAACTCGA---
TGTCGTGACCCCTTAAT

MA0505.1_Nr5a2/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-ATGAACTCGA----
GCTGACCTTGAACTN