Information for 2-GCAATCATCG (Motif 2)


Reverse Opposite:

p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets539.0 +/- 0.0bp
Average Position of motif in Background614.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----GCAATCATCG--
AAGGCGAAATCATCGCA

MA0038.1_Gfi1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCAATCATCG
CAAATCACTG

PH0026.1_Duxbl/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCAATCATCG---
CGACCCAATCAACGGTG

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCAATCATCG
GGCCATTAAC-

PH0022.1_Dlx3/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCAATCATCG---
NNNGGTAATTATNGNGN

MA0070.1_PBX1/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCAATCATCG
CCATCAATCAAA-

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCAATCATCG-
-AAATCACTGC

PH0023.1_Dlx4/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GCAATCATCG---
GTCGGTAATTATNGNGN

PH0041.1_Hmx1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCAATCATCG---
ACAAGCAATTAATGAAT

MA0060.2_NFYA/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GCAATCATCG----
TGGACCAATCAGCACTCT