Information for 12-ATCCAAAATCAC (Motif 5)


Reverse Opposite:

p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets303.0 +/- 0.0bp
Average Position of motif in Background529.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0038.1_Gfi1/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:forward strand
Alignment:ATCCAAAATCAC--
----CAAATCACTG

PH0037.1_Hdx/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ATCCAAAATCAC----
AAGGCGAAATCATCGCA

MA0483.1_Gfi1b/Jaspar

Match Rank:3
Score:0.61
Offset:5
Orientation:forward strand
Alignment:ATCCAAAATCAC----
-----AAATCACAGCA

MA0592.1_ESRRA/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:ATCCAAAATCAC-
--CCAAGGTCACA

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.58
Offset:5
Orientation:forward strand
Alignment:ATCCAAAATCAC---
-----AAATCACTGC

PB0037.1_Isgf3g_1/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----ATCCAAAATCAC
CAAAATCGAAACTAA-

MA0507.1_POU2F2/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--ATCCAAAATCAC
ATATGCAAATNNN-

PB0014.1_Esrra_1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ATCCAAAATCAC----
TATTCAAGGTCATGCGA

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:9
Score:0.53
Offset:5
Orientation:forward strand
Alignment:ATCCAAAATCAC---
-----AAACCACANN

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--ATCCAAAATCAC
TTATGCAAAT----