Information for 13-GGTACTGAATGG (Motif 6)


Reverse Opposite:

p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets326.0 +/- 0.0bp
Average Position of motif in Background291.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0060.2_NFYA/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GGTACTGAATGG----
AGAGTGCTGATTGGTCCA

MA0502.1_NFYB/Jaspar

Match Rank:2
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GGTACTGAATGG-------
----CTGATTGGTCNATTT

PB0068.1_Sox1_1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGTACTGAATGG---
NNNTATTGAATTGNNN

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GGTACTGAATGG
NNTNTCATGAATGT

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GGTACTGAATGG-----
-----TGATTGGCTANN

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGTACTGAATGG-----
-ACTATGAATGAATGAT

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GGTACTGAATGG--
----CCGATTGGCT

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGTACTGAATGG
CGGAAGTGAAAC-

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GGTACTGAATGG--
----GTTAATGGCC

PB0051.1_Osr2_1/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GGTACTGAATGG
CNNNGCTACTGTANNN