Information for 15-ATCATCTAATGG (Motif 7)


Reverse Opposite:

p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets420.0 +/- 0.0bp
Average Position of motif in Background157.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.67
Offset:5
Orientation:forward strand
Alignment:ATCATCTAATGG-
-----CTAATKGV

MA0132.1_Pdx1/Jaspar

Match Rank:2
Score:0.62
Offset:5
Orientation:forward strand
Alignment:ATCATCTAATGG
-----CTAATT-

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:3
Score:0.59
Offset:4
Orientation:forward strand
Alignment:ATCATCTAATGG
----GKTAATGR

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:ATCATCTAATGG--
----GTTAATGGCC

PH0056.1_Hoxa9/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-ATCATCTAATGG----
ANTAATTTTATGGCCGN

MA0488.1_JUN/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---ATCATCTAATGG
AAGATGATGTCAT--

PH0037.1_Hdx/Jaspar

Match Rank:7
Score:0.54
Offset:-8
Orientation:forward strand
Alignment:--------ATCATCTAATGG
AAGGCGAAATCATCGCA---

MA0091.1_TAL1::TCF3/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--ATCATCTAATGG
CGACCATCTGTT--

PH0009.1_Bsx/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:ATCATCTAATGG----
NTNAGNTAATTACCTN

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:ATCATCTAATGG
GTCATN------