Information for 19-TCGAATGAATTG (Motif 9)


Reverse Opposite:

p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets525.0 +/- 0.0bp
Average Position of motif in Background308.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TCGAATGAATTG---
NNNTATTGAATTGNNN

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---TCGAATGAATTG-
ACTATGAATGAATGAT

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TCGAATGAATTG
NNTNTCATGAATGT

PB0175.1_Sox4_2/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TCGAATGAATTG-------
--GGAAAAATTGTTAGGAA

PB0005.1_Bbx_1/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TCGAATGAATTG
NANTTCATTGAATTA

PB0170.1_Sox17_2/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TCGAATGAATTG----
NTTNTATGAATGTGNNC

PB0066.1_Sox17_1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TCGAATGAATTG-----
--NNATNAATTGTTTNN

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TCGAATGAATTG
--TAATCAATTA

PH0070.1_Hoxc5/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TCGAATGAATTG------
-CGAATTAATTAATTACT

PH0090.1_Lbx2/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCGAATGAATTG-----
TNNNATTAATTAANNCA