Information for 1-GAGTTGAACCTT (Motif 1)


Reverse Opposite:

p-value:1e-20
log p-value:-4.779e+01
Information Content per bp:1.880
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.28%
Number of Background Sequences with motif34.4
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets250.3 +/- 164.3bp
Average Position of motif in Background262.4 +/- 189.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.83
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0153.1_HNF1B/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GAGTTGAACCTT--
--GTTAAATATTAA

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:2
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAGTTGAACCTT--
-GGTTAAACATTAA

PB0030.1_Hnf4a_1/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAGTTGAACCTT----
NNANTTGACCCCTNNNN

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GAGTTGAACCTT
--TTTGAAACCG

MA0164.1_Nr2e3/Jaspar

Match Rank:5
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:GAGTTGAACCTT-
------AAGCTTG

MA0017.1_NR2F1/Jaspar

Match Rank:6
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GAGTTGAACCTT------
----TGACCTTTGAACCT

MA0133.1_BRCA1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GAGTTGAACCTT
GTGTTGN-----

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GAGTTGAACCTT----
NNNNTGACCTTTNNNN

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GAGTTGAACCTT
CGGAAGTGAAAC--

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GAGTTGAACCTT----
NNNGTGACCTTTGNNN