Information for 3-AGSTATCGWA (Motif 13)


Reverse Opposite:

p-value:1e-11
log p-value:-2.757e+01
Information Content per bp:1.813
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.41%
Number of Background Sequences with motif128.9
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets281.9 +/- 133.5bp
Average Position of motif in Background303.0 +/- 194.1bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGSTATCGWA
NTATYGATCH--

PB0105.1_Arid3a_2/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGSTATCGWA---
ACCCGTATCAAATTT

MA0070.1_PBX1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGSTATCGWA
CCATCAATCAAA

PB0035.1_Irf5_1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGSTATCGWA-----
ATAAACCGAAACCAA

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGSTATCGWA
GYCATCMATCAT-

PB0034.1_Irf4_1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGSTATCGWA------
-CGTATCGAAACCAAA

PB0126.1_Gata5_2/Jaspar

Match Rank:7
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----AGSTATCGWA--
GACAGAGATATCAGTGT

PB0127.1_Gata6_2/Jaspar

Match Rank:8
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----AGSTATCGWA---
GCGGCGATATCGCAGCG

PB0040.1_Lef1_1/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AGSTATCGWA------
NANAGATCAAAGGGNNN

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AGSTATCGWA------
NNNAGATCAAAGGANNN