Information for 2-GCGGTAAA (Motif 15)


Reverse Opposite:

p-value:1e-9
log p-value:-2.099e+01
Information Content per bp:1.783
Number of Target Sequences with motif184.0
Percentage of Target Sequences with motif23.35%
Number of Background Sequences with motif7325.4
Percentage of Background Sequences with motif15.10%
Average Position of motif in Targets281.4 +/- 159.0bp
Average Position of motif in Background278.8 +/- 174.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GCGGTAAA-
GGCGGGAAAH

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:2
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--GCGGTAAA--
TGGCGGGAAAHB

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GCGGTAAA-
GGCGGGAARN

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:4
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---GCGGTAAA
CWGGCGGGAA-

MA0470.1_E2F4/Jaspar

Match Rank:5
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GCGGTAAA-
GGGCGGGAAGG

MA0471.1_E2F6/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GCGGTAAA-
GGGCGGGAAGG

E2F(E2F)/Hela-CellCycle-Expression/Homer

Match Rank:7
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GCGGTAAA-
TTCGCGCGAAAA

PH0158.1_Rhox11_2/Jaspar

Match Rank:8
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GCGGTAAA----
AGGACGCTGTAAAGGGA

MA0024.2_E2F1/Jaspar

Match Rank:9
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GCGGTAAA
CGGGCGGGAGG

PH0157.1_Rhox11_1/Jaspar

Match Rank:10
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GCGGTAAA----
AAGACGCTGTAAAGCGA