Information for 16-TGTCTTACTCTC (Motif 17)


Reverse Opposite:

p-value:1e-8
log p-value:-1.968e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets302.4 +/- 182.7bp
Average Position of motif in Background218.0 +/- 16.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGTCTTACTCTC
TGTCTGDCACCT

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGTCTTACTCTC
CTGTCTGTCACCT

PB0140.1_Irf6_2/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TGTCTTACTCTC------
---ACCACTCTCGGTCAC

MA0032.1_FOXC1/Jaspar

Match Rank:4
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:TGTCTTACTCTC-
-----TACTNNNN

PB0139.1_Irf5_2/Jaspar

Match Rank:5
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TGTCTTACTCTC------
---NNAATTCTCGNTNAN

PB0138.1_Irf4_2/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TGTCTTACTCTC------
---AGTATTCTCGGTTGC

MA0081.1_SPIB/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:TGTCTTACTCTC
----TTCCTCT-

MA0598.1_EHF/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TGTCTTACTCTC
--CCTTCCTG--

PB0094.1_Zfp128_1/Jaspar

Match Rank:9
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----TGTCTTACTCTC-
TCTTTGGCGTACCCTAA

MA0080.3_Spi1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TGTCTTACTCTC---
NCACTTCCTCTTTTN