Information for 6-TGGACTGA (Motif 19)


Reverse Opposite:

p-value:1e-6
log p-value:-1.520e+01
Information Content per bp:1.832
Number of Target Sequences with motif188.0
Percentage of Target Sequences with motif23.86%
Number of Background Sequences with motif8142.5
Percentage of Background Sequences with motif16.79%
Average Position of motif in Targets275.7 +/- 167.1bp
Average Position of motif in Background280.2 +/- 172.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0596.1_SREBF2/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TGGACTGA-
ATGGGGTGAT

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TGGACTGA-
ATGGGGTGAT

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TGGACTGA---
GTGGCGTGACNG

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TGGACTGA----
NNATTGGACTTTNGNN

MA0595.1_SREBF1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGGACTGA-
GTGGGGTGAT

MA0070.1_PBX1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGGACTGA---
TTTGATTGATGN

MA0479.1_FOXH1/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TGGACTGA-
TGTGGATTNNN

POL002.1_INR/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGGACTGA
NNNANTGA

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TGGACTGA
NNTGTGGATTSS

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TGGACTGA
NCTGGAATGC