Information for 2-AATGTCCACTTG (Motif 2)


Reverse Opposite:

p-value:1e-18
log p-value:-4.329e+01
Information Content per bp:1.900
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.28%
Number of Background Sequences with motif44.7
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets294.3 +/- 143.5bp
Average Position of motif in Background260.0 +/- 189.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.78
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0111.1_Nkx2-2/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AATGTCCACTTG------
-ATAACCACTTGAAAATT

PB0134.1_Hnf4a_2/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----AATGTCCACTTG
GGCAAAAGTCCAATAA

MA0122.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:AATGTCCACTTG-
----NCCACTTAN

PH0114.1_Nkx2-5/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AATGTCCACTTG-----
-TAAGCCACTTGAATTT

PH0004.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AATGTCCACTTG-----
CATAACCACTTAACAAC

MA0130.1_ZNF354C/Jaspar

Match Rank:6
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AATGTCCACTTG
---ATCCAC---

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AATGTCCACTTG-----
CTTAACCACTTAAGGAT

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AATGTCCACTTG
ATTTTCCATT--

PH0115.1_Nkx2-6/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AATGTCCACTTG-----
-TAAGCCACTTAACATT

PH0113.1_Nkx2-4/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AATGTCCACTTG-----
-TAAGCCACTTGAAATT