Information for 8-GTCGTATG (Motif 23)


Reverse Opposite:

p-value:1e-6
log p-value:-1.386e+01
Information Content per bp:1.610
Number of Target Sequences with motif180.0
Percentage of Target Sequences with motif22.84%
Number of Background Sequences with motif7875.1
Percentage of Background Sequences with motif16.24%
Average Position of motif in Targets279.8 +/- 163.4bp
Average Position of motif in Background283.8 +/- 169.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0033.1_FOXL1/Jaspar

Match Rank:1
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:GTCGTATG----
----TATGTNTA

PB0106.1_Arid5a_2/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GTCGTATG-----
TNNTTTCGTATTNNANN

PB0143.1_Klf7_2/Jaspar

Match Rank:3
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------GTCGTATG---
NNNTNGGGCGTATNNTN

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTCGTATG-----
CCATTGTATGCAAAT

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTCGTATG-
VBSYGTCTGG

PB0032.1_IRC900814_1/Jaspar

Match Rank:6
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------GTCGTATG-
GNNATTTGTCGTAANN

PH0077.1_Hoxd12/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GTCGTATG-----
CAAGGTCGTAAAATCTT

MA0032.1_FOXC1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GTCGTATG
GGTAAGTA--

PH0067.1_Hoxc12/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GTCGTATG-----
TTAGGTCGTAAAATTTC

PH0066.1_Hoxc11/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GTCGTATG----
TAAAGTCGTAAAATAG