Information for 22-GAGCATCSRA (Motif 29)


Reverse Opposite:

p-value:1e-4
log p-value:-9.340e+00
Information Content per bp:1.748
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif251.2
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets263.3 +/- 148.3bp
Average Position of motif in Background280.2 +/- 160.1bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.57
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GAGCATCSRA
GGGAGGACNG--

PB0133.1_Hic1_2/Jaspar

Match Rank:2
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------GAGCATCSRA
NNNNTTGGGCACNNCN

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GAGCATCSRA
CGGAGC------

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----GAGCATCSRA--
NNNNTGAGCACTGTNNG

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:5
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GAGCATCSRA----
CCNNACCATCTGGCCTN

PB0181.1_Spdef_2/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GAGCATCSRA----
GATAACATCCTAGTAG

PB0105.1_Arid3a_2/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GAGCATCSRA---
ACCCGTATCAAATTT

MA0014.2_PAX5/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GAGCATCSRA-------
GAGGGCAGCCAAGCGTGAC

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:9
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GAGCATCSRA-
GGACCACCCACG

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:10
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----GAGCATCSRA
CCGCATAGCAACGGA