Information for 18-AGGGTCGT (Motif 30)


Reverse Opposite:

p-value:1e-3
log p-value:-8.174e+00
Information Content per bp:1.953
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.41%
Number of Background Sequences with motif462.8
Percentage of Background Sequences with motif0.95%
Average Position of motif in Targets284.3 +/- 168.9bp
Average Position of motif in Background285.7 +/- 177.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0067.1_Hoxc12/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGGGTCGT--------
TTAGGTCGTAAAATTTC

PH0077.1_Hoxd12/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGGGTCGT--------
CAAGGTCGTAAAATCTT

PH0076.1_Hoxd11/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGGGTCGT--------
TAAGGTCGTAAAATCCT

PH0066.1_Hoxc11/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGGGTCGT-------
TAAAGTCGTAAAATAG

PB0014.1_Esrra_1/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----AGGGTCGT----
TATTCAAGGTCATGCGA

PH0065.1_Hoxc10/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGGGTCGT-------
TAAAGTCGTAAAACGT

PH0047.1_Hoxa11/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGGGTCGT-------
TAAAGTCGTAAAACAT

PB0136.1_IRC900814_2/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AGGGTCGT----
ATGGAAAGTCGTAAAA

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGGGTCGT--
CGTGGGTGGTCC

PB0049.1_Nr2f2_1/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----AGGGTCGT---
TCTCAAAGGTCACGAG