Information for 22-AGTCGATT (Motif 31)


Reverse Opposite:

p-value:1e-2
log p-value:-4.711e+00
Information Content per bp:1.889
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.92%
Number of Background Sequences with motif817.7
Percentage of Background Sequences with motif1.69%
Average Position of motif in Targets283.2 +/- 160.9bp
Average Position of motif in Background282.4 +/- 172.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--AGTCGATT--
NNTGTGGATTSS

MA0479.1_FOXH1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:AGTCGATT---
TGTGGATTNNN

MA0130.1_ZNF354C/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGTCGATT
-GTGGAT-

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGTCGATT-
TAATTGATTA

MA0467.1_Crx/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGTCGATT--
AAGAGGATTAG

MA0122.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGTCGATT
TTAAGTGGA--

PH0026.1_Duxbl/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AGTCGATT------
NNNNGTTGATTGGGTCG

PH0115.1_Nkx2-6/Jaspar

Match Rank:8
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------AGTCGATT-
AATNTTAAGTGGNTNN

PH0114.1_Nkx2-5/Jaspar

Match Rank:9
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------AGTCGATT-
AAATTCAAGTGGNTTN

PH0113.1_Nkx2-4/Jaspar

Match Rank:10
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------AGTCGATT-
AATTTCAAGTGGCTTN