Information for 4-TTTCAAAACTGC (Motif 4)


Reverse Opposite:

p-value:1e-17
log p-value:-4.087e+01
Information Content per bp:1.887
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.79%
Number of Background Sequences with motif94.9
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets286.5 +/- 165.7bp
Average Position of motif in Background289.8 +/- 176.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.82
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TTTCAAAACTGC
CGGTTTCAAA-----

MA0102.3_CEBPA/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTTCAAAACTGC
ATTGCACAATA--

PB0146.1_Mafk_2/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TTTCAAAACTGC----
-GAAAAAATTGCAAGG

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:4
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TTTCAAAACTGC--
----NHAACBGYYV

PB0013.1_Eomes_1/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TTTCAAAACTGC--
NNTTTTCACACCTTNNN

PB0034.1_Irf4_1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TTTCAAAACTGC-
CGTATCGAAACCAAA

MA0100.2_Myb/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:TTTCAAAACTGC--
----CCAACTGCCA

MA0522.1_Tcf3/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TTTCAAAACTGC--
---CACAGCTGCAG

MA0152.1_NFATC2/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TTTCAAAACTGC
TTTTCCA------

PB0148.1_Mtf1_2/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TTTCAAAACTGC
NNTTTTTCTTATNT--