| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File | |
| 1 | | FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-3 | -7.222e+00 | 0.1928 | 106.0 | 13.45% | 4783.8 | 9.86% | motif file (matrix) | |
| 2 | | STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer | 1e-2 | -4.692e+00 | 1.0000 | 117.0 | 14.85% | 5813.9 | 11.99% | motif file (matrix) | |
| 3 | | STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer | 1e-2 | -4.623e+00 | 1.0000 | 117.0 | 14.85% | 5827.2 | 12.01% | motif file (matrix) |