Information for 9-AGATTGTGGAGC (Motif 10)


Reverse Opposite:

p-value:1e-18
log p-value:-4.240e+01
Information Content per bp:1.965
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets142.0 +/- 70.9bp
Average Position of motif in Background171.0 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0130.1_ZNF354C/Jaspar

Match Rank:1
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:AGATTGTGGAGC
-----GTGGAT-

MA0078.1_Sox17/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGATTGTGGAGC
CTCATTGTC----

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:AGATTGTGGAGC
------CGGAGC

PB0175.1_Sox4_2/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AGATTGTGGAGC-
GGAAAAATTGTTAGGAA

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGATTGTGGAGC
--ATTGTT----

CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGATTGTGGAGC
--ATTGCGCAAC

MA0084.1_SRY/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AGATTGTGGAGC
--ATTGTTTAN-

MA0087.1_Sox5/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGATTGTGGAGC
--ATTGTTA---

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGATTGTGGAGC-
-NNHTGTGGTTWN

PB0165.1_Sox11_2/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AGATTGTGGAGC-
AAAATTGTTATGAA