Information for 3-GCGTTTTA (Motif 12)


Reverse Opposite:

p-value:1e-17
log p-value:-3.917e+01
Information Content per bp:1.640
Number of Target Sequences with motif691.0
Percentage of Target Sequences with motif29.49%
Number of Background Sequences with motif9786.3
Percentage of Background Sequences with motif21.95%
Average Position of motif in Targets117.0 +/- 65.8bp
Average Position of motif in Background119.9 +/- 73.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GCGTTTTA-----
---TTTTATTRGN

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCGTTTTA-------
NNANTTTTATTGGNNN

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GCGTTTTA-----
---TTTAATTGCN

POL012.1_TATA-Box/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCGTTTTA---
NNNNNNCTTTTATAN

MA0108.2_TBP/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCGTTTTA---
NNNNNNCTTTTATAN

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCGTTTTA----
--NTTTTATGAC

MA0465.1_CDX2/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCGTTTTA------
---TTTTATGGCTN

PB0194.1_Zbtb12_2/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCGTTTTA------
AGNGTTCTAATGANN

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCGTTTTA-------
NGANTTTTATGGCTCN

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GCGTTTTA
NNTGTGGTTT-