Information for 5-TGCATGCATA (Motif 15)


Reverse Opposite:

p-value:1e-16
log p-value:-3.723e+01
Information Content per bp:1.492
Number of Target Sequences with motif77.0
Percentage of Target Sequences with motif3.29%
Number of Background Sequences with motif482.6
Percentage of Background Sequences with motif1.08%
Average Position of motif in Targets128.8 +/- 64.3bp
Average Position of motif in Background108.6 +/- 85.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.73
Offset:3
Orientation:forward strand
Alignment:TGCATGCATA---
---ATGMATATDC

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TGCATGCATA-----
AAAATATGCATAATAAA

PH0082.1_Irx2/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TGCATGCATA--
ANTNTTACATGTATNTA

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGCATGCATA-----
NTTNTATGAATGTGNNC

PH0084.1_Irx3_2/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TGCATGCATA--
NNTATTACATGTANNNT

PH0083.1_Irx3_1/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TGCATGCATA--
ANTATTACATGTANNNN

PB0028.1_Hbp1_1/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TGCATGCATA--
ACTATGAATGAATGAT

PH0087.1_Irx6/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TGCATGCATA--
ANTTNTACATGTANTTN

MA0507.1_POU2F2/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TGCATGCATA----
-ATATGCAAATNNN

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TGCATGCATA-----
---ATGCATAATTCA