Information for 13-TGACCCGCTAAC (Motif 20)


Reverse Opposite:

p-value:1e-13
log p-value:-3.047e+01
Information Content per bp:1.744
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif38.7
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets98.0 +/- 62.0bp
Average Position of motif in Background116.1 +/- 81.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGACCCGCTAAC----
TGACCCAGTGACCTAC

PB0153.1_Nr2f2_2/Jaspar

Match Rank:2
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----TGACCCGCTAAC
NNNNTGACCCGGCGCG

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGACCCGCTAAC
TGACCT------

PB0057.1_Rxra_1/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----TGACCCGCTAAC
TGTCGTGACCCCTTAAT

PB0030.1_Hnf4a_1/Jaspar

Match Rank:5
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TGACCCGCTAAC
NNANTTGACCCCTNNNN

PB0118.1_Esrra_2/Jaspar

Match Rank:6
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TGACCCGCTAAC
NNNNTTGACCCCTNNNN

PB0157.1_Rara_2/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TGACCCGCTAAC
NNCNTGACCCCGCTCT

MA0071.1_RORA_1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGACCCGCTAAC
TGACCTTGAT--

MA0072.1_RORA_2/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGACCCGCTAAC-
TTGACCTANTTATN

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGACCCGCTAAC
TGACCTARTT--